SURFACE-Bind
  • Home
  • Analysis
  • Protein Families
    • Enzymes
    • Receptors
    • Transporters
    • Miscellaneous
    • Unclassified
    • Unmatched
  • About
  1. Other_receptors
  2. Q8NAC3

  • GPCR
    • A3KFT3
    • A4D2G3
    • A6NCV1
    • A6ND48
    • A6NDH6
    • A6NDL8
    • A6NET4
    • A6NF89
    • A6NGY5
    • A6NH00
    • A6NHA9
    • A6NHG9
    • A6NIJ9
    • A6NJZ3
    • A6NKK0
    • A6NL08
    • A6NL26
    • A6NM03
    • A6NM76
    • A6NMS3
    • A6NMU1
    • A6NMZ5
    • A6NND4
    • B2RN74
    • O00144
    • O00155
    • O00222
    • O00270
    • O00398
    • O00421
    • O00590
    • O14581
    • O14626
    • O14842
    • O14843
    • O15218
    • O15303
    • O15354
    • O15529
    • O15552
    • O43193
    • O43194
    • O43603
    • O43613
    • O43614
    • O43749
    • O43869
    • O60353
    • O60403
    • O60404
    • O60412
    • O60431
    • O60755
    • O75084
    • O75388
    • O75473
    • O75899
    • O76000
    • O76001
    • O76002
    • O76099
    • O76100
    • O95006
    • O95007
    • O95013
    • O95047
    • O95136
    • O95221
    • O95222
    • O95371
    • O95665
    • O95800
    • O95838
    • O95918
    • O95977
    • P0C7N1
    • P0C7N5
    • P0C7N8
    • P0C7T2
    • P0C7T3
    • P0C604
    • P0C617
    • P0C623
    • P0C626
    • P0C628
    • P0C629
    • P0C645
    • P0C646
    • P03999
    • P04201
    • P07550
    • P08172
    • P08173
    • P08588
    • P08908
    • P08912
    • P08913
    • P11229
    • P13945
    • P14416
    • P18089
    • P18825
    • P20309
    • P21452
    • P21453
    • P21462
    • P21554
    • P21728
    • P21730
    • P21731
    • P21917
    • P21918
    • P25021
    • P25024
    • P25025
    • P25089
    • P25100
    • P25103
    • P25105
    • P25106
    • P25116
    • P25929
    • P28221
    • P28222
    • P28335
    • P28566
    • P29274
    • P29275
    • P29371
    • P30411
    • P30518
    • P30542
    • P30550
    • P30559
    • P30872
    • P30874
    • P30939
    • P30953
    • P30954
    • P30968
    • P30988
    • P31391
    • P32238
    • P32241
    • P32245
    • P32246
    • P32247
    • P32248
    • P32249
    • P32302
    • P32745
    • P33032
    • P34969
    • P34972
    • P34981
    • P34982
    • P34995
    • P34998
    • P35346
    • P35367
    • P35368
    • P35372
    • P35408
    • P35410
    • P35414
    • P35462
    • P37288
    • P41143
    • P41145
    • P41146
    • P41180
    • P41231
    • P41586
    • P41587
    • P41968
    • P43088
    • P43115
    • P43116
    • P43119
    • P43220
    • P43657
    • P46089
    • P46092
    • P46093
    • P46095
    • P46663
    • P47211
    • P47775
    • P47804
    • P47872
    • P47881
    • P47883
    • P47884
    • P47887
    • P47888
    • P47890
    • P47893
    • P47898
    • P47900
    • P47901
    • P48145
    • P48146
    • P48546
    • P49019
    • P49146
    • P49190
    • P49238
    • P49286
    • P49683
    • P49685
    • P50052
    • P50391
    • P50406
    • P51582
    • P51677
    • P51684
    • P51686
    • P55085
    • P58170
    • P58173
    • P58180
    • P58181
    • P58182
    • P59533
    • P59534
    • P59540
    • P59541
    • P59542
    • P59543
    • P59922
    • P60893
    • P61073
    • Q5JQS5
    • Q5JRS4
    • Q5NUL3
    • Q5T6X5
    • Q5T848
    • Q5TZ20
    • Q5UAW9
    • Q5VW38
    • Q6DWJ6
    • Q6IEU7
    • Q6IEV9
    • Q6IEY1
    • Q6IEZ7
    • Q6IF00
    • Q6IF42
    • Q6IF63
    • Q6IF82
    • Q6IF99
    • Q6IFG1
    • Q6IFH4
    • Q6IFN5
    • Q6NV75
    • Q6PRD1
    • Q6U736
    • Q6W5P4
    • Q7RTX0
    • Q7RTX1
    • Q7Z5H5
    • Q7Z601
    • Q7Z602
    • Q8IXE1
    • Q8IYL9
    • Q8N0Y3
    • Q8N0Y5
    • Q8N6U8
    • Q8N127
    • Q8N146
    • Q8N148
    • Q8N162
    • Q8N349
    • Q8N628
    • Q8NDV2
    • Q8NFJ5
    • Q8NFJ6
    • Q8NFN8
    • Q8NFZ6
    • Q8NG75
    • Q8NG76
    • Q8NG77
    • Q8NG78
    • Q8NG80
    • Q8NG81
    • Q8NG83
    • Q8NG84
    • Q8NG85
    • Q8NG92
    • Q8NG94
    • Q8NG95
    • Q8NG98
    • Q8NG99
    • Q8NGA0
    • Q8NGA1
    • Q8NGA2
    • Q8NGA5
    • Q8NGA6
    • Q8NGA8
    • Q8NGB2
    • Q8NGB4
    • Q8NGB6
    • Q8NGB8
    • Q8NGB9
    • Q8NGC0
    • Q8NGC1
    • Q8NGC2
    • Q8NGC3
    • Q8NGC4
    • Q8NGC5
    • Q8NGC6
    • Q8NGC7
    • Q8NGC8
    • Q8NGC9
    • Q8NGD0
    • Q8NGD2
    • Q8NGD3
    • Q8NGD4
    • Q8NGD5
    • Q8NGE0
    • Q8NGE1
    • Q8NGE2
    • Q8NGE3
    • Q8NGE5
    • Q8NGE7
    • Q8NGE8
    • Q8NGE9
    • Q8NGF0
    • Q8NGF1
    • Q8NGF3
    • Q8NGF4
    • Q8NGF6
    • Q8NGF7
    • Q8NGF8
    • Q8NGF9
    • Q8NGG0
    • Q8NGG1
    • Q8NGG2
    • Q8NGG3
    • Q8NGG4
    • Q8NGG5
    • Q8NGG6
    • Q8NGG7
    • Q8NGG8
    • Q8NGH3
    • Q8NGH5
    • Q8NGH6
    • Q8NGH7
    • Q8NGH8
    • Q8NGH9
    • Q8NGI0
    • Q8NGI1
    • Q8NGI2
    • Q8NGI3
    • Q8NGI4
    • Q8NGI6
    • Q8NGI7
    • Q8NGI8
    • Q8NGI9
    • Q8NGJ0
    • Q8NGJ1
    • Q8NGJ2
    • Q8NGJ3
    • Q8NGJ4
    • Q8NGJ5
    • Q8NGJ6
    • Q8NGJ7
    • Q8NGJ8
    • Q8NGK0
    • Q8NGK1
    • Q8NGK2
    • Q8NGK3
    • Q8NGK4
    • Q8NGK5
    • Q8NGK6
    • Q8NGK9
    • Q8NGL0
    • Q8NGL1
    • Q8NGL2
    • Q8NGL3
    • Q8NGL4
    • Q8NGL6
    • Q8NGL7
    • Q8NGL9
    • Q8NGM1
    • Q8NGM8
    • Q8NGM9
    • Q8NGN0
    • Q8NGN1
    • Q8NGN2
    • Q8NGN3
    • Q8NGN4
    • Q8NGN5
    • Q8NGN6
    • Q8NGN7
    • Q8NGN8
    • Q8NGP0
    • Q8NGP2
    • Q8NGP3
    • Q8NGP4
    • Q8NGP6
    • Q8NGP8
    • Q8NGP9
    • Q8NGQ1
    • Q8NGQ2
    • Q8NGQ3
    • Q8NGQ4
    • Q8NGQ5
    • Q8NGQ6
    • Q8NGR1
    • Q8NGR2
    • Q8NGR3
    • Q8NGR4
    • Q8NGR5
    • Q8NGR6
    • Q8NGR8
    • Q8NGR9
    • Q8NGS0
    • Q8NGS1
    • Q8NGS2
    • Q8NGS3
    • Q8NGS4
    • Q8NGS5
    • Q8NGS6
    • Q8NGS7
    • Q8NGS8
    • Q8NGS9
    • Q8NGT0
    • Q8NGT1
    • Q8NGT2
    • Q8NGT7
    • Q8NGT9
    • Q8NGU1
    • Q8NGU4
    • Q8NGU9
    • Q8NGV0
    • Q8NGV5
    • Q8NGV6
    • Q8NGV7
    • Q8NGW1
    • Q8NGW6
    • Q8NGX0
    • Q8NGX1
    • Q8NGX2
    • Q8NGX3
    • Q8NGX5
    • Q8NGX6
    • Q8NGX8
    • Q8NGX9
    • Q8NGY0
    • Q8NGY1
    • Q8NGY2
    • Q8NGY3
    • Q8NGY5
    • Q8NGY6
    • Q8NGY7
    • Q8NGY9
    • Q8NGZ0
    • Q8NGZ2
    • Q8NGZ3
    • Q8NGZ4
    • Q8NGZ5
    • Q8NGZ6
    • Q8NGZ9
    • Q8NH00
    • Q8NH01
    • Q8NH02
    • Q8NH03
    • Q8NH04
    • Q8NH05
    • Q8NH06
    • Q8NH07
    • Q8NH09
    • Q8NH10
    • Q8NH16
    • Q8NH18
    • Q8NH19
    • Q8NH21
    • Q8NH37
    • Q8NH40
    • Q8NH41
    • Q8NH42
    • Q8NH43
    • Q8NH48
    • Q8NH49
    • Q8NH50
    • Q8NH51
    • Q8NH53
    • Q8NH54
    • Q8NH55
    • Q8NH56
    • Q8NH57
    • Q8NH59
    • Q8NH60
    • Q8NH61
    • Q8NH63
    • Q8NH64
    • Q8NH69
    • Q8NH70
    • Q8NH72
    • Q8NH73
    • Q8NH74
    • Q8NH76
    • Q8NH79
    • Q8NH80
    • Q8NH81
    • Q8NH83
    • Q8NH85
    • Q8NH87
    • Q8NH90
    • Q8NH92
    • Q8NH93
    • Q8NH94
    • Q8NH95
    • Q8NHA4
    • Q8NHA6
    • Q8NHA8
    • Q8NHB1
    • Q8NHB7
    • Q8NHB8
    • Q8NHC4
    • Q8NHC5
    • Q8NHC6
    • Q8NHC7
    • Q8NHC8
    • Q8TCB6
    • Q8TCW9
    • Q8TDS4
    • Q8TDS5
    • Q8TDS7
    • Q8TDT2
    • Q8TDU9
    • Q8TDV2
    • Q8TDV5
    • Q8TE23
    • Q8WZ84
    • Q8WZ92
    • Q8WZ94
    • Q8WZA6
    • Q9BXA5
    • Q9BXC0
    • Q9BXC1
    • Q9BXE9
    • Q9BY21
    • Q9BZJ6
    • Q9BZJ7
    • Q9BZJ8
    • Q9GZK3
    • Q9GZK4
    • Q9GZK6
    • Q9GZK7
    • Q9GZM6
    • Q9GZN0
    • Q9GZP7
    • Q9GZQ6
    • Q9H1C0
    • Q9H1Y3
    • Q9H2C5
    • Q9H2C8
    • Q9H3N8
    • Q9H205
    • Q9H207
    • Q9H208
    • Q9H209
    • Q9H210
    • Q9H228
    • Q9H255
    • Q9H339
    • Q9H340
    • Q9H341
    • Q9H342
    • Q9H343
    • Q9H346
    • Q9H461
    • Q9HB89
    • Q9HBW0
    • Q9HBX8
    • Q9HBX9
    • Q9HC97
    • Q9HCU4
    • Q9NPB9
    • Q9NPC1
    • Q9NPG1
    • Q9NQ84
    • Q9NQN1
    • Q9NS66
    • Q9NS67
    • Q9NSD7
    • Q9NWF4
    • Q9NYM4
    • Q9NYQ6
    • Q9NYQ7
    • Q9NYV7
    • Q9NYV8
    • Q9NYW0
    • Q9NYW1
    • Q9NYW2
    • Q9NYW3
    • Q9NYW5
    • Q9NYW6
    • Q9NYW7
    • Q9NZD1
    • Q9NZH0
    • Q9NZP0
    • Q9NZP2
    • Q9NZP5
    • Q9P1P5
    • Q9P1Q5
    • Q9P296
    • Q9UBS5
    • Q9UBY5
    • Q9UGF5
    • Q9UGF6
    • Q9UGF7
    • Q9UHM6
    • Q9UKL2
    • Q9UKP6
    • Q9ULV1
    • Q9ULW2
    • Q9UNW8
    • Q9UP38
    • Q9UPC5
    • Q9Y2T5
    • Q9Y2T6
    • Q9Y3N9
    • Q9Y4A9
    • Q9Y5N1
    • Q9Y5P0
    • Q9Y5P1
    • Q9Y5X5
    • Q9Y5Y3
    • Q9Y5Y4
    • Q9Y585
    • Q49SQ1
    • Q86SM5
    • Q86SM8
    • Q86VZ1
    • Q96CH1
    • Q96KK4
    • Q96LA9
    • Q96LB0
    • Q96LB1
    • Q96LB2
    • Q96P65
    • Q96P66
    • Q96P67
    • Q96P68
    • Q96P69
    • Q96P88
    • Q96R08
    • Q96R09
    • Q96R27
    • Q96R28
    • Q96R45
    • Q96R47
    • Q96R48
    • Q96R54
    • Q96R67
    • Q96R69
    • Q96R72
    • Q96R84
    • Q96RA2
    • Q96RB7
    • Q96RC9
    • Q96RD0
    • Q96RD1
    • Q96RD2
    • Q96RD3
    • Q96RI0
    • Q96RI9
    • Q96RJ0
    • Q969F8
    • Q969V1
    • Q01718
    • Q01726
    • Q02643
    • Q03431
    • Q13255
    • Q13258
    • Q13304
    • Q13324
    • Q13467
    • Q13585
    • Q13606
    • Q13607
    • Q14330
    • Q14332
    • Q14416
    • Q14439
    • Q14831
    • Q14832
    • Q14833
    • Q15077
    • Q15612
    • Q15617
    • Q15619
    • Q15620
    • Q15622
    • Q15722
    • Q15760
    • Q15761
    • Q16538
    • Q16570
    • Q16581
    • Q16602
    • Q92847
    • Q99463
    • Q99500
    • Q99527
    • Q99677
    • Q99678
    • Q99680
    • Q99705
    • Q99788
    • Q99835

  • IG
    • A6NI73
    • O14931
    • O14931
    • O75015
    • O75019
    • O75022
    • O75023
    • O75054
    • O76036
    • O95185
    • O95256
    • O95944
    • O95976
    • P01589
    • P01833
    • P06126
    • P08637
    • P08887
    • P10912
    • P12314
    • P12318
    • P12319
    • P14778
    • P14784
    • P15151
    • P15260
    • P15509
    • P15812
    • P15813
    • P16471
    • P16871
    • P17181
    • P19235
    • P24394
    • P26951
    • P26992
    • P27930
    • P29016
    • P29017
    • P31785
    • P31994
    • P31995
    • P32927
    • P32942
    • P38484
    • P40189
    • P40238
    • P42701
    • P42702
    • P43146
    • P43626
    • P43627
    • P43628
    • P43629
    • P43630
    • P43631
    • P43632
    • P48357
    • P48551
    • P55899
    • P59901
    • P78310
    • P78552
    • Q2VWP7
    • Q4KMG0
    • Q5DX21
    • Q5T2D2
    • Q5VWK5
    • Q6DN72
    • Q6IA17
    • Q6PI73
    • Q6Q8B3
    • Q6UXG3
    • Q6UXL0
    • Q6UXZ4
    • Q6ZN44
    • Q8IU57
    • Q8IVU1
    • Q8IZJ1
    • Q8N6C5
    • Q8N6P7
    • Q8N109
    • Q8N149
    • Q8N423
    • Q8N743
    • Q8NHK3
    • Q8NHL6
    • Q8NI17
    • Q8TD46
    • Q8TDQ1
    • Q8TDY8
    • Q8WWV6
    • Q9BWV1
    • Q9HB29
    • Q9HBE5
    • Q9HCK4
    • Q9NP60
    • Q9NP99
    • Q9NPH3
    • Q9NSI5
    • Q9NZC2
    • Q9NZN1
    • Q9UGN4
    • Q9UHF4
    • Q9Y6N7
    • Q96LA5
    • Q96LA6
    • Q96MS0
    • Q96P31
    • Q496F6
    • Q969P0
    • Q01113
    • Q01344
    • Q01638
    • Q08334
    • Q08708
    • Q13261
    • Q13478
    • Q13651
    • Q14626
    • Q14627
    • Q14943
    • Q14952
    • Q14953
    • Q14954
    • Q15109
    • Q15762
    • Q92637
    • Q92859
    • Q93033
    • Q99062
    • Q99650
    • Q99665
    • Q99706
    • Q99795

  • Kinase
    • O15146
    • O15197
    • P00533
    • P04626
    • P04629
    • P06213
    • P07333
    • P07949
    • P08069
    • P08581
    • P08922
    • P09619
    • P10721
    • P11362
    • P14616
    • P16066
    • P16234
    • P17342
    • P17948
    • P20594
    • P21709
    • P21802
    • P21860
    • P22455
    • P22607
    • P25092
    • P27037
    • P29317
    • P29320
    • P29322
    • P29323
    • P29376
    • P30530
    • P34925
    • P35590
    • P35916
    • P35968
    • P36888
    • P36894
    • P36896
    • P36897
    • P37023
    • P37173
    • P54753
    • P54756
    • P54760
    • P54762
    • P54764
    • Q5JZY3
    • Q8NER5
    • Q9UF33
    • Q01973
    • Q01974
    • Q02763
    • Q04771
    • Q04912
    • Q06418
    • Q08345
    • Q12866
    • Q13308
    • Q13705
    • Q13873
    • Q15303
    • Q15375
    • Q16288
    • Q16620
    • Q16671
    • Q16832

  • Other_receptors
    • O00206
    • O00220
    • O14522
    • O14786
    • O14836
    • O15031
    • O15455
    • O43157
    • O60462
    • O60486
    • O60602
    • O60603
    • O60895
    • O60896
    • O75051
    • O75074
    • O75096
    • O75197
    • O75509
    • O75578
    • O75581
    • P01130
    • P01133
    • P05106
    • P05107
    • P05556
    • P06756
    • P08138
    • P08514
    • P08575
    • P08648
    • P10586
    • P11215
    • P13612
    • P14151
    • P16109
    • P16144
    • P16581
    • P17301
    • P18084
    • P18433
    • P18564
    • P19438
    • P20333
    • P20701
    • P20702
    • P23229
    • P23467
    • P23468
    • P23470
    • P23471
    • P25445
    • P25942
    • P26006
    • P26010
    • P26012
    • P28827
    • P28908
    • P34741
    • P36941
    • P38570
    • P43489
    • P46531
    • P51805
    • P53708
    • P56199
    • P58400
    • P58401
    • P78357
    • P98155
    • P98164
    • Q5VYJ5
    • Q7Z4F1
    • Q8NAC3
    • Q8NFM7
    • Q8NFR9
    • Q8WY21
    • Q8WYK1
    • Q9BXR5
    • Q9BZ76
    • Q9C0A0
    • Q9HAV5
    • Q9HCM2
    • Q9HD43
    • Q9HDB5
    • Q9NR96
    • Q9NR97
    • Q9NRM6
    • Q9NS68
    • Q9NYK1
    • Q9NZR2
    • Q9P2S2
    • Q9UBN6
    • Q9UHC6
    • Q9UIW2
    • Q9UKX5
    • Q9ULB1
    • Q9ULL4
    • Q9UM47
    • Q9UMZ3
    • Q9UNE0
    • Q9UPU3
    • Q9Y2C9
    • Q9Y4C0
    • Q9Y4D7
    • Q9Y5U5
    • Q9Y6Q6
    • Q9Y561
    • Q86VZ4
    • Q96F46
    • Q96NU0
    • Q96PQ0
    • Q969Z4
    • Q02223
    • Q04721
    • Q07011
    • Q07954
    • Q12913
    • Q13332
    • Q13349
    • Q13635
    • Q13683
    • Q13797
    • Q14114
    • Q15256
    • Q15262
    • Q15399
    • Q16827
    • Q16849
    • Q92673
    • Q92729
    • Q92932
    • Q92956
    • Q93038
    • Q99466
    • Q99467
    • Q99523

  • SCAR
    • A6BM72
    • O60449
    • P07306
    • P07307
    • P13473
    • P16671
    • P21757
    • P22897
    • P26715
    • P26717
    • P26718
    • P78380
    • P98153
    • Q2HXU8
    • Q5QGZ9
    • Q5VY43
    • Q6UX15
    • Q6UXB4
    • Q6UXN8
    • Q6ZS10
    • Q8IX05
    • Q8NC01
    • Q8WTV0
    • Q8WWQ8
    • Q9BXN2
    • Q9H2X3
    • Q9HCU0
    • Q9NY25
    • Q9NZS2
    • Q9P126
    • Q9UBG0
    • Q9UHP7
    • Q9UQV4
    • Q96E93
    • Q96GP6
    • Q96KG7
    • Q07108
    • Q07444
    • Q12918
    • Q13018
    • Q14162

  • Receptors

On this page

  • General information
  • AlphaFold model
  • Surface representation - binding sites
  • All detected seeds aligned
  • Seed scores per sites
  • Binding site metrics
  • Binding site sequence composition
  • Download
  1. Other_receptors
  2. Q8NAC3

Q8NAC3

Author

Hamed Khakzad

Published

August 10, 2024

General information

Code
import requests
import urllib3
urllib3.disable_warnings()

def fetch_uniprot_data(uniprot_id):
    url = f"https://rest.uniprot.org/uniprotkb/{uniprot_id}.json"
    response = requests.get(url, verify=False)  # Disable SSL verification
    response.raise_for_status()  # Raise an error for bad status codes
    return response.json()

def display_uniprot_data(data):
    primary_accession = data.get('primaryAccession', 'N/A')
    protein_name = data.get('proteinDescription', {}).get('recommendedName', {}).get('fullName', {}).get('value', 'N/A')
    gene_name = data.get('gene', [{'geneName': {'value': 'N/A'}}])[0]['geneName']['value']
    organism = data.get('organism', {}).get('scientificName', 'N/A')
    
    function_comment = next((comment for comment in data.get('comments', []) if comment['commentType'] == "FUNCTION"), None)
    function = function_comment['texts'][0]['value'] if function_comment else 'N/A'

    # Printing the data
    print(f"UniProt ID: {primary_accession}")
    print(f"Protein Name: {protein_name}")
    print(f"Organism: {organism}")
    print(f"Function: {function}")

# Replace this with the UniProt ID you want to fetch
uniprot_id = "Q8NAC3"
data = fetch_uniprot_data(uniprot_id)
display_uniprot_data(data)
UniProt ID: Q8NAC3
Protein Name: Interleukin-17 receptor C
Organism: Homo sapiens
Function: Receptor for IL17A and IL17F, major effector cytokines of innate and adaptive immune system involved in antimicrobial host defense and maintenance of tissue integrity (By similarity). Receptor for IL17A and IL17F, major effector cytokines of innate and adaptive immune system involved in antimicrobial host defense and maintenance of tissue integrity. Receptor for IL17A and IL17F homodimers as part of a heterodimeric complex with IL17RA (PubMed:16785495). Receptor for the heterodimer formed by IL17A and IL17B as part of a heterodimeric complex with IL17RA (PubMed:18684971). Has also been shown to be the cognate receptor for IL17F and to bind IL17A with high affinity without the need for IL17RA (PubMed:17911633). Upon binding of IL17F homodimer triggers downstream activation of TRAF6 and NF-kappa-B signaling pathway (PubMed:16785495, PubMed:32187518). Induces transcriptional activation of IL33, a potent cytokine that stimulates group 2 innate lymphoid cells and adaptive T-helper 2 cells involved in pulmonary allergic response to fungi (By similarity). Promotes sympathetic innervation of peripheral organs by coordinating the communication between gamma-delta T cells and parenchymal cells. Stimulates sympathetic innervation of thermogenic adipose tissue by driving TGFB1 expression (By similarity). Binding of IL17A-IL17F to IL17RA-IL17RC heterodimeric receptor complex triggers homotypic interaction of IL17RA and IL17RC chains with TRAF3IP2 adapter through SEFIR domains. This leads to downstream TRAF6-mediated activation of NF-kappa-B and MAPkinase pathways ultimately resulting in transcriptional activation of cytokines, chemokines, antimicrobial peptides and matrix metalloproteinases, with potential strong immune inflammation (PubMed:17911633, PubMed:18684971). Primarily induces neutrophil activation and recruitment at infection and inflammatory sites (By similarity). Stimulates the production of antimicrobial beta-defensins DEFB1, DEFB103A, and DEFB104A by mucosal epithelial cells, limiting the entry of microbes through the epithelial barriers (By similarity)

More information:   

AlphaFold model

Surface representation - binding sites

The computed point cloud for pLDDT > 0.6. Each atom is sampled on average by 10 points.

To see the predicted binding interfaces, you can choose color theme “uncertainty”.

  • Go to the “Controls Panel”

  • Below “Components”, to the right, click on “…”

  • “Set Coloring” by “Atom Property”, and “Uncertainty/Disorder”

All detected seeds aligned

Seed scores per sites

Code
import re
import pandas as pd
import os
import plotly.express as px

ID = "Q8NAC3"
data_list = []

name_pattern = re.compile(r'name: (\S+)')
score_pattern = re.compile(r'score: (\d+\.\d+)')
desc_dist_score_pattern = re.compile(r'desc_dist_score: (\d+\.\d+)')

directory = f"/Users/hamedkhakzad/Research_EPFL/1_postdoc_project/Surfaceome_web_app/www/Surfaceome_top100_per_site/{ID}_A"

for filename in os.listdir(directory):
    if filename.startswith("output_sorted_") and filename.endswith(".score"):
        filepath = os.path.join(directory, filename)
        with open(filepath, 'r') as file:
            for line in file:
                name_match = name_pattern.search(line)
                score_match = score_pattern.search(line)
                desc_dist_score_match = desc_dist_score_pattern.search(line)
                
                if name_match and score_match and desc_dist_score_match:
                    name = name_match.group(1)
                    score = float(score_match.group(1))
                    desc_dist_score = float(desc_dist_score_match.group(1))
                    
                    simple_filename = filename.replace("output_sorted_", "").replace(".score", "")
                    data_list.append({
                        'name': name[:-1],
                        'score': score,
                        'desc_dist_score': desc_dist_score,
                        'file': simple_filename
                    })

data = pd.DataFrame(data_list)

fig = px.scatter(
    data,
    x='score',
    y='desc_dist_score',
    color='file',
    title='Score vs Desc Dist Score',
    labels={'score': 'Score', 'desc_dist_score': 'Desc Dist Score'},
    hover_data={'name': True}
)

fig.update_layout(
    legend_title_text='File',
    legend=dict(
        yanchor="top",
        y=0.99,
        xanchor="left",
        x=1.05
    )
)

fig.show()

Binding site metrics

Code
import pandas as pd
pd.options.mode.chained_assignment = None
import plotly.express as px

df_total = pd.read_csv('/Users/hamedkhakzad/Research_EPFL/1_postdoc_project/Surfaceome_web_app/www/database/df_flattened.csv')
df_plot = df_total[df_total['acc_flat'] == ID]
df_plot ['Total seeds'] = df_plot.loc[:,['seedss_a','seedss_b']].sum(axis=1)
df_plot.loc[:, ["acc_flat", "main_classs", "sub_classs", "seedss_a", "seedss_b", "areass", "bsss", "hpss"]]
acc_flat main_classs sub_classs seedss_a seedss_b areass bsss hpss
2030 Q8NAC3 Receptors Other_receptors 0 2 3399.503642 539 42.30000
2031 Q8NAC3 Receptors Other_receptors 0 0 1472.739269 283 12.09990
2032 Q8NAC3 Receptors Other_receptors 4 17 859.925662 265 2.49999
2033 Q8NAC3 Receptors Other_receptors 267 816 868.668598 229 13.99990
2034 Q8NAC3 Receptors Other_receptors 11 104 1685.983791 199 -14.90000
Code
import math
import matplotlib.pyplot as plt

features = ['seedss_a', 'seedss_b', 'areass', 'hpss']
titles = ['Alpha seeds', 'Beta seeds', 'Area', 'Hydrophobicity']
num_features = len(features)

if len(df_plot) > 8:
    num_rows = 2
    num_cols = 2
else:
    num_rows = 1
    num_cols = 4

fig, axes = plt.subplots(nrows=num_rows, ncols=num_cols, figsize=(9, num_rows * 5))

axes = axes.flatten()
positions = range(1, len(df_plot) + 1)

for i, feature in enumerate(features):
    title = titles[i]
    axes[i].bar(positions, df_plot[feature], color=['blue', 'orange', 'green', 'red', 'purple', 'brown'])
    axes[i].set_title(title, fontsize=13)
    axes[i].set_xticks(positions)
    axes[i].set_xticklabels(df_plot['bsss'], rotation=90)
    axes[i].set_xlabel("Center residues", fontsize=13)
    axes[i].set_ylabel(title, fontsize=13)

for j in range(len(features), len(axes)):
    fig.delaxes(axes[j])

plt.tight_layout()
plt.show()

Binding site sequence composition

Code
amino_acid_map = {
    'ALA': 'A', 'ARG': 'R', 'ASN': 'N', 'ASP': 'D', 'CYS': 'C',
    'GLN': 'Q', 'GLU': 'E', 'GLY': 'G', 'HIS': 'H', 'ILE': 'I',
    'LEU': 'L', 'LYS': 'K', 'MET': 'M', 'PHE': 'F', 'PRO': 'P',
    'SER': 'S', 'THR': 'T', 'TRP': 'W', 'TYR': 'Y', 'VAL': 'V'
}

from collections import Counter
from ast import literal_eval
from matplotlib.gridspec import GridSpec
import warnings
warnings.filterwarnings("ignore", message="Attempting to set identical low and high xlims")

def convert_to_single_letter(aa_list):
    if type(aa_list) == str:
        aa_list = literal_eval(aa_list)
    return [amino_acid_map[aa] for aa in aa_list]

def create_sequence_visualizations(df, max_letters_per_row=20):
    for idx, row in df.iterrows():
        bsss = row['bsss']
        AAss = row['AAss']
        single_letter_sequence = convert_to_single_letter(AAss)
        
        freq_counter = Counter(single_letter_sequence)
        total_aa = len(single_letter_sequence)
        frequencies = {aa: freq / total_aa for aa, freq in freq_counter.items()}
        
        cmap = plt.get_cmap('viridis')
        norm = plt.Normalize(0, max(frequencies.values()) if frequencies else 1)
        
        n_rows = (len(single_letter_sequence) + max_letters_per_row - 1) // max_letters_per_row
        fig = plt.figure(figsize=(max_letters_per_row * 0.6, n_rows * 1.2 + 0.5))
        
        gs = GridSpec(n_rows + 1, 1, height_ratios=[1] * n_rows + [0.1], hspace=0.3)
        
        for row_idx in range(n_rows):
            start_idx = row_idx * max_letters_per_row
            end_idx = min((row_idx + 1) * max_letters_per_row, len(single_letter_sequence))
            ax = fig.add_subplot(gs[row_idx, 0])
            ax.set_xlim(0, max_letters_per_row)
            ax.set_ylim(0, 1)
            ax.axis('off')
            
            for i, aa in enumerate(single_letter_sequence[start_idx:end_idx]):
                freq = frequencies[aa]
                color = cmap(norm(freq))
                ax.text(i + 0.5, 0.5, aa, ha='center', va='center', fontsize=24, color=color, fontweight='bold')
        
        cbar_ax = fig.add_subplot(gs[-1, 0])
        sm = plt.cm.ScalarMappable(cmap=cmap, norm=norm)
        sm.set_array([])
        cbar = plt.colorbar(sm, cax=cbar_ax, orientation='horizontal')
        cbar.set_label('Frequency', fontsize=12)
        cbar.ax.tick_params(labelsize=12)
        
        plt.suptitle(f"Center residue {bsss}", fontsize=14)
        plt.subplots_adjust(left=0.1, right=0.9, top=0.9, bottom=0.1)
        plt.show()
            
create_sequence_visualizations(df_plot)

Download

To download all the seeds and score files for this entry Click Here!

Q7Z4F1
Q8NFM7